PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603272.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 301aa    MW: 34719.4 Da    PI: 8.1347
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603272.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.9e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++  G+g +W + ++++g++R++k+c++rw++yl
   XP_013603272.1 14 KGPWSPEEDAKLKSYIETSGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding31.93e-1070111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++ E+  + ++    G++ W+ Ia+ ++ gRt++++k++w++
   XP_013603272.1  70 GFSEAEENVICNLYLTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      68999***************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.815962IPR017930Myb domain
SuperFamilySSF466898.77E-2511109IPR009057Homeodomain-like
SMARTSM007171.9E-111364IPR001005SANT/Myb domain
PfamPF002498.5E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221569IPR009057Homeodomain-like
CDDcd001678.91E-81662No hitNo description
PROSITE profilePS5129419.14963117IPR017930Myb domain
SMARTSM007178.0E-967115IPR001005SANT/Myb domain
PfamPF002496.2E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2270118IPR009057Homeodomain-like
CDDcd001671.27E-571113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRSPCCDKA NVKKGPWSPE EDAKLKSYIE TSGTGGNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEAEENVIC NLYLTIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLIIK  120
QRKELQEACI EQQEMMVMLK RQQQQIQPTF MMRQDQTMFT WPLQKLPFHH HNDGQVPTLV  180
MNSFGDQEDI KPEIIKNMVK IEDQEPERTN AFDHLYFSQL LLDFNSNYLG SGEGFSMNSI  240
LSTNTNSPLR NTSISHQRFR NFHDEAVDLF LGETGTSADQ STIRWEDISS LVYSDSKQVV  300
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22141177108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195971e-164AY519597.1 Arabidopsis thaliana MYB transcription factor (At3g49690) mRNA, complete cds.
GenBankBT0292241e-164BT029224.1 Arabidopsis thaliana At3g49690 mRNA, complete cds.
GenBankY142091e-164Y14209.1 A.thaliana mRNA for AtMYB84 R2R3-MYB transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603272.10.0PREDICTED: transcription factor RAX3
SwissprotQ9M2Y91e-164RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A0D3DRN60.0A0A0D3DRN6_BRAOL; Uncharacterized protein
STRINGBra017963.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29412568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-153myb domain protein 84